Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11284075 chr2:242532988 TA/T 5.98E-11 176 25.77 25 10.3 KM Plot
PCPG rs112842768 chr13:114745781 A/G 0.000149 170 25.77 25.17 3.17 KM Plot
PCPG rs11287506 chr21:34613935 AT/A 0.000389 171 20.37 31.72 25.08 KM Plot
PCPG rs112877133 chr17:1410882 T/G 1.46E-5 174 25.05 25 25.17 KM Plot
PCPG rs112882504 chr17:1420825 T/C 1.64E-5 173 25.47 25.43 1.2 KM Plot
PCPG rs112931321 chr12:56667894 C/T 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs112938594 chr7:36168362 A/C 0.000446 177 25.87 24.5 14.37 KM Plot
PCPG rs112939656 chr17:1427085 G/C 1.25E-5 176 24.7 26.73 25.17 KM Plot
PCPG rs112946952 chr17:80493917 AT/A 4.82E-5 176 25.87 22.33 7.2 KM Plot
PCPG rs112951389 chr11:18147125 T/TAAGG 3.94E-5 175 26.43 24.1 6.7 KM Plot
PCPG rs112959931 chr16:90142852 C/A 8.58E-9 176 25.77 20.28 6.62 KM Plot
PCPG rs112986141 chr3:182611323 G/A 3.94E-6 173 25.87 26.57 13.27 KM Plot
PCPG rs11303510 chr2:136399543 AT/A 0.000219 177 25.7 25.67 14.5 KM Plot
PCPG rs113040491 chr12:131386545 C/T 1.62E-7 173 24.23 32.03 19.87 KM Plot
PCPG rs113051356 chr13:114179990 G/A 4.67E-12 177 24.17 30.33 3.32 KM Plot